What is L1Base?
L1Base is a dedicated database containing putatively active LINE-1 (L1) insertions residing in human and rodent genomes: a) intact in the two ORFs, full length L1s (FLI-L1s) and b) L1s with intact ORF2 but disrupted ORF1 (ORF2-L1s). In addition, due to their regulatory potential, the full length (>6000bp) non-intact L1s (FLnI-L1s) were also included in the database.
If you are experimentalists and you seek a bioinformatics expertise
on analysis of LINE-1 elements,
do not hesitate to send us an
email!
If you are using data stored in L1Base for your research please cite L1Base:
from functional annotation to prediction of active LINE-1
elements Nucl. Acids Res. 2004 33: D498-D500; doi:10.1093/nar/gki044
HumanMouseNCBIm35- Mouse Full-Length, Intact LINE-1 Elements [FLI-L1] (Ens38.35)
(2382 Entries, Last Update: 2007-10-15 16:23:11)
- Mouse ORF2 Intact LINE-1 Elements [ORF2-L1] (Ens38.35)
(466 Entries, Last Update: 2007-10-15 17:54:49)
- Mouse Full-Length >5knt LINE-1 Elements [FLnI-L1] (Ens38.35)
(13692 Entries, Last Update: 2007-10-15 16:54:02)
- Mouse >5knt LINE-1 Elements in Intron Sense intronic [SENSE-L1] (Ens38.35)
(1014 Entries, Last Update: 2007-10-15 16:32:11)
- Mouse >5knt LINE-1 Elements in Intron Antisense intronic [ANTISENSE-L1] (Ens38.35)
(1739 Entries, Last Update: 2007-10-15 16:14:15)
NCBIm33- Mouse Full-Length, Intact LINE-1 Elements [FLI-L1] (Ens24.33)
(1501 Entries, Last Update: 2007-10-14 21:07:01)
- Mouse ORF2 Intact LINE-1 Elements [ORF2-L1] (Ens24.33)
(261 Entries, Last Update: 2007-10-14 21:07:29)
- Mouse Full-Length >4500nt LINE-1 Elements [FLnI-L1] (Ens24.33)
(5713 Entries, Last Update: 2007-10-14 21:07:18)
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